Step 1: Role of microorganisms in yoghurt production.
Yoghurt is produced through the fermentation of milk using specific bacteria. \textit{Streptococcus thermophilus} and \textit{Lactobacillus delbrueckii subsp. bulgaricus} are commonly used starter cultures.
Step 2: Explanation of other microorganisms.
\textit{Streptococcus penicillium (Option B):} Incorrect. This is not a known species used in yoghurt production.
\textit{Penicillium roqueforti (Option C):} Incorrect. This fungus is used in the production of blue cheese, not yoghurt.
\textit{Aspergillus niger (Option D):} Incorrect. This fungus is used for industrial production of citric acid, not yoghurt.
\[
\therefore \text{The correct answer is: \textit{Streptococcus thermophilus}.}
\]